PH01000990G0430's details annotation
1.Annotation
ICBR annotation: senescence-associated protein, putative, expressed
Blast result AT3G21600 : 1.10E-77
Blast annotation: Senescence/dehydration-associated protein-related
2.Location
Scaffold: PH01000990
Strand: +
| Region | Start | End |
| gene | 276356 | 278292 |
| mRNA | 276356 | 278292 |
| exon | 276356 | 277126 |
| exon | 277214 | 277344 |
| exon | 277445 | 277611 |
| exon | 277797 | 277881 |
| exon | 277982 | 278292 |
| CDS | 276584 | 277126 |
| CDS | 277214 | 277344 |
| CDS | 277445 | 277611 |
| CDS | 277797 | 277881 |
| CDS | 277982 | 278141 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06911.11 | Senescence | 160 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.