Annotation of co-expression genes

PH01000991G0410's details annotation

1.Annotation

ICBR annotation: ubiquitin-activating enzyme, putative, expressed

Blast result AT2G30110 : 0.00E+00
Blast annotation: ubiquitin-activating enzyme 1

2.Location

Scaffold: PH01000991
Strand: +

RegionStartEnd
gene240901247652
mRNA240901247652
exon240901241085
exon241534241751
exon242500243294
exon243383244251
exon244454244886
exon245107247652
CDS240950241085
CDS241534241751
CDS242500243294
CDS243383244251
CDS244454244886
CDS245107245703

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001379small protein activating enzyme activity,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
proteasome complex,
regulation of protein catabolic process,
Proteasome
enzyme regulator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00899.20ThiF14390
PF16190.4E1_FCCH187257
PF16191.4E1_4HB259328
PF00899.20ThiF410910
PF10585.8UBA_e1_thiolCys597850
PF09358.9E1_UFD9211010

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ubiquitin mediated proteolysisubiquitin-activating enzyme E1 [EC:6.3.2.19]ko04120K03178

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0006464cellular protein modification process
GO:0008641small protein activating enzyme activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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