Annotation of co-expression genes

PH01000993G0610's details annotation

1.Annotation

ICBR annotation: protein kinase family protein, putative, expressed

Blast result AT2G40120 : 2.00E-113
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000993
Strand: +

RegionStartEnd
gene423871430051
mRNA423871430051
exon423871424576
exon424929425561
exon426238426544
exon426631426910
exon427237427258
exon427444427736
exon428063428116
exon428435428713
exon429156429299
exon429941430051
CDS424333424576
CDS424929425561
CDS426238426544
CDS426631426910
CDS427237427258
CDS427444427736
CDS428063428116
CDS428435428713
CDS429156429299
CDS429941429949

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000881CMGC_DYRK-PRP4 (from iTAK)
microtubule associated complex,
Starch_and_sucrose_metabolism
sucrose metabolic process,
sucrose synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase523718

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.