PH01000995G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G22600 : 4.80E-18
Blast annotation: -
2.Location
Scaffold: PH01000995
Strand: +
| Region | Start | End |
| gene | 41710 | 44170 |
| mRNA | 41710 | 44170 |
| exon | 41710 | 44170 |
| CDS | 42671 | 43297 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001787 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, cellular protein modification process, binding, |
| coexpression network | CFinderM001824 | rRNA modification, rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, tRNA aminoacylation, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001846 | rRNA modification, rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, tRNA aminoacylation, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14144.5 | DOG1 | 34 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.