PH01000996G0010's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT2G34710 : 0.00E+00
Blast annotation: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01000996
Strand: -
| Region | Start | End |
| gene | 3256 | 11521 |
| mRNA | 3256 | 11521 |
| exon | 3256 | 5072 |
| exon | 5170 | 5319 |
| exon | 5408 | 5513 |
| exon | 5704 | 6029 |
| exon | 6117 | 6251 |
| exon | 6335 | 6415 |
| exon | 6503 | 6691 |
| exon | 6802 | 6994 |
| exon | 7097 | 7203 |
| exon | 7318 | 7392 |
| exon | 7495 | 7650 |
| exon | 7865 | 7948 |
| exon | 8051 | 8164 |
| exon | 8238 | 8333 |
| exon | 8427 | 8517 |
| exon | 8611 | 8726 |
| exon | 9008 | 9167 |
| exon | 10151 | 11521 |
| CDS | 4926 | 5072 |
| CDS | 5170 | 5319 |
| CDS | 5408 | 5513 |
| CDS | 5704 | 6029 |
| CDS | 6117 | 6251 |
| CDS | 6335 | 6415 |
| CDS | 6503 | 6691 |
| CDS | 6802 | 6994 |
| CDS | 7097 | 7203 |
| CDS | 7318 | 7392 |
| CDS | 7495 | 7650 |
| CDS | 7865 | 7948 |
| CDS | 8051 | 8164 |
| CDS | 8238 | 8333 |
| CDS | 8427 | 8517 |
| CDS | 8611 | 8726 |
| CDS | 9008 | 9167 |
| CDS | 10151 | 10398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 31 | 88 |
| PF01852.18 | START | 179 | 386 |
| PF08670.10 | MEKHLA | 714 | 856 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.