PH01001001G0050's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT1G59990 : 3.00E-146
Blast annotation: DEA(D/H)-box RNA helicase family protein
2.Location
Scaffold: PH01001001
Strand: -
| Region | Start | End |
| gene | 40573 | 45541 |
| mRNA | 40573 | 45541 |
| exon | 40573 | 40792 |
| exon | 40881 | 41033 |
| exon | 41327 | 41654 |
| exon | 41871 | 42253 |
| exon | 42623 | 42745 |
| exon | 43060 | 43347 |
| exon | 44030 | 45541 |
| CDS | 40706 | 40792 |
| CDS | 40881 | 41033 |
| CDS | 41327 | 41654 |
| CDS | 41871 | 42253 |
| CDS | 42623 | 42745 |
| CDS | 43060 | 43347 |
| CDS | 44030 | 44356 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001237 | |
| coexpression network | CFinderM001296 | CMGC_DYRK-PRP4 (from iTAK) RLK-Pelle_DLSV (from iTAK) recognition of pollen, protein phosphorylation, |
| coexpression network | CFinderM001328 | GT32 GlycosylTransferases Golgi stack, CMGC_SRPK (from iTAK) |
| coexpression network | CFinderM001704 | RLK-Pelle_DLSV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 108 | 254 |
| PF00271.30 | Helicase_C | 410 | 504 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.