PH01001001G0210's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT1G70210 : 5.10E-48
Blast annotation: CYCLIN D1;1
2.Location
Scaffold: PH01001001
Strand: +
| Region | Start | End |
| gene | 122615 | 126224 |
| mRNA | 122615 | 126224 |
| exon | 122615 | 123010 |
| exon | 123237 | 123323 |
| exon | 124822 | 125023 |
| exon | 125104 | 125234 |
| exon | 125339 | 125398 |
| exon | 126076 | 126224 |
| CDS | 122762 | 123010 |
| CDS | 123237 | 123323 |
| CDS | 124822 | 125023 |
| CDS | 125104 | 125234 |
| CDS | 125339 | 125398 |
| CDS | 126076 | 126174 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000322 | Endocytosis protein refolding, vesicle docking involved in exocytosis, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 48 | 110 |
| PF02984.18 | Cyclin_C | 143 | 242 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.