PH01001003G0660's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT2G39970 : 4.00E-105
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01001003
Strand: +
| Region | Start | End |
| gene | 418320 | 422080 |
| mRNA | 418320 | 422080 |
| exon | 418320 | 418631 |
| exon | 418925 | 418999 |
| exon | 419088 | 419218 |
| exon | 419399 | 419453 |
| exon | 419557 | 419667 |
| exon | 420840 | 420908 |
| exon | 420981 | 421088 |
| exon | 421374 | 421442 |
| exon | 421536 | 421590 |
| exon | 421748 | 422080 |
| CDS | 418551 | 418631 |
| CDS | 418925 | 418999 |
| CDS | 419088 | 419218 |
| CDS | 419399 | 419453 |
| CDS | 419557 | 419667 |
| CDS | 420840 | 420908 |
| CDS | 420981 | 421088 |
| CDS | 421374 | 421442 |
| CDS | 421536 | 421590 |
| CDS | 421748 | 421950 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 83 | 195 |
| PF00153.26 | Mito_carr | 207 | 294 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17 | ko04146 | K13354 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.