PH01001003G0730's details annotation
1.Annotation
ICBR annotation: coronatine-insensitive protein, putative, expressed
Blast result AT2G39940 : 0.00E+00
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01001003
Strand: +
| Region | Start | End |
| gene | 450938 | 454967 |
| mRNA | 450938 | 454967 |
| exon | 450938 | 451871 |
| exon | 452364 | 452850 |
| exon | 452968 | 454967 |
| CDS | 451453 | 451871 |
| CDS | 452364 | 452850 |
| CDS | 452968 | 453750 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001467 | HMG Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001596 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity ATP_catabolic_process ATP biosynthetic process, ATP metabolic process, malate metabolic process, proton transport, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.