Annotation of co-expression genes

PH01001006G0150's details annotation

1.Annotation

ICBR annotation: hydrolase, alpha/beta fold family protein, putative, expressed

Blast result AT3G10840 : 2.70E-39
Blast annotation: alpha/beta-Hydrolases superfamily protein

2.Location

Scaffold: PH01001006
Strand: -

RegionStartEnd
gene7862286627
mRNA7862286627
exon7862279296
exon7952579691
exon8058780705
exon8115581256
exon8147181591
exon8167781775
exon8246682784
exon8361283836
exon8517686627
CDS7919479296
CDS7952579691
CDS8058780705
CDS8115581256
CDS8147181591
CDS8167781775
CDS8246682784
CDS8361283836
CDS8517685423

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01149.23Fapy_DNA_glyco171

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003684damaged DNA binding
GO:0003906DNA-(apurinic or apyrimidinic site) lyase activity
GO:0006284base-excision repair
GO:0008270zinc ion binding
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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