PH01001007G0060's details annotation
1.Annotation
ICBR annotation: ATROPGEF7/ROPGEF7, putative, expressed
Blast result AT1G31650 : 1.00E-140
Blast annotation: RHO guanyl-nucleotide exchange factor 14
2.Location
Scaffold: PH01001007
Strand: -
| Region | Start | End |
| gene | 40966 | 47287 |
| mRNA | 40966 | 47287 |
| exon | 40966 | 41639 |
| exon | 41766 | 42113 |
| exon | 42216 | 42518 |
| exon | 42701 | 42775 |
| exon | 42871 | 43025 |
| exon | 43120 | 43533 |
| exon | 44505 | 44656 |
| exon | 45013 | 45043 |
| exon | 46245 | 47287 |
| CDS | 41352 | 41639 |
| CDS | 41766 | 42113 |
| CDS | 42216 | 42518 |
| CDS | 42701 | 42775 |
| CDS | 42871 | 43025 |
| CDS | 43120 | 43533 |
| CDS | 44505 | 44656 |
| CDS | 45013 | 45043 |
| CDS | 46245 | 46320 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03759.12 | PRONE | 185 | 554 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.