PH01001008G0250's details annotation
1.Annotation
ICBR annotation: CAS1 domain-containing protein 1 precursor, putative, expressed
Blast result AT2G34410 : 0.00E+00
Blast annotation: O-acetyltransferase family protein
2.Location
Scaffold: PH01001008
Strand: -
| Region | Start | End |
| gene | 199218 | 207430 |
| mRNA | 199218 | 207430 |
| exon | 199218 | 199610 |
| exon | 199959 | 200015 |
| exon | 200109 | 200171 |
| exon | 200257 | 200345 |
| exon | 200451 | 200537 |
| exon | 200717 | 200838 |
| exon | 200915 | 201170 |
| exon | 201265 | 201414 |
| exon | 202851 | 203009 |
| exon | 203974 | 204046 |
| exon | 204121 | 204177 |
| exon | 204275 | 204403 |
| exon | 205572 | 205642 |
| exon | 205877 | 207430 |
| CDS | 199586 | 199610 |
| CDS | 199959 | 200015 |
| CDS | 200109 | 200171 |
| CDS | 200257 | 200345 |
| CDS | 200451 | 200537 |
| CDS | 200717 | 200838 |
| CDS | 200915 | 201170 |
| CDS | 201265 | 201414 |
| CDS | 202851 | 203009 |
| CDS | 203974 | 204046 |
| CDS | 204121 | 204177 |
| CDS | 204275 | 204403 |
| CDS | 205572 | 205642 |
| CDS | 205877 | 205909 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07779.11 | Cas1_AcylT | 90 | 448 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.