PH01001008G0490's details annotation
1.Annotation
ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed
Blast result AT5G46410 : 4.60E-65
Blast annotation: SCP1-like small phosphatase 4
2.Location
Scaffold: PH01001008
Strand: -
| Region | Start | End |
| gene | 393259 | 398986 |
| mRNA | 393259 | 398986 |
| exon | 393259 | 393656 |
| exon | 393846 | 394183 |
| exon | 394809 | 395315 |
| exon | 395527 | 395629 |
| exon | 396575 | 396705 |
| exon | 397381 | 398986 |
| CDS | 393489 | 393656 |
| CDS | 393846 | 394183 |
| CDS | 394809 | 395315 |
| CDS | 395527 | 395629 |
| CDS | 396575 | 396705 |
| CDS | 397381 | 397624 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03031.17 | NIF | 322 | 482 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.