Annotation of co-expression genes

PH01001009G0240's details annotation

1.Annotation

ICBR annotation: RING finger and CHY zinc finger domain-containing protein 1, putative, expressed

Blast result AT5G18650 : 1.50E-85
Blast annotation: CHY-type/CTCHY-type/RING-type Zinc finger protein

2.Location

Scaffold: PH01001009
Strand: +

RegionStartEnd
gene163203170510
mRNA163203170510
exon163203165018
exon165265165352
exon166041166085
exon166300166381
exon166426166506
exon167896167978
exon168050168141
exon168252168321
exon168650168688
exon169041169164
exon170031170510
CDS164597165018
CDS165265165352
CDS166041166085
CDS166300166381
CDS166426166506
CDS167896167978
CDS168050168141
CDS168252168321
CDS168650168688
CDS169041169164
CDS170031170239

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05495.11zf-CHY142207
PF13639.5zf-RING_2261304
PF14599.5zinc_ribbon_6309366

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ubiquitin mediated proteolysisRING finger and CHY zinc finger domain-containing protein 1ko04120K10144

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.