Annotation of co-expression genes

PH01001010G0020's details annotation

1.Annotation

ICBR annotation: CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed

Blast result AT3G45640 : 2.00E-167
Blast annotation: mitogen-activated protein kinase 3

2.Location

Scaffold: PH01001010
Strand: -

RegionStartEnd
gene1179214261
mRNA1179214261
exon1179212149
exon1267913195
exon1328713424
exon1355213681
exon1396914261
CDS1197712149
CDS1267913195
CDS1328713424
CDS1355213681
CDS1396914120

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000447CMGC_MAPK (from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
ubiquitin ligase complex,
extracellular region,
coexpression networkCFinderM000986CMGC_MAPK (from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase41322

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0004707MAP kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.