Annotation of co-expression genes

PH01001011G0160's details annotation

1.Annotation

ICBR annotation: 3-ketoacyl-CoA synthase, putative, expressed

Blast result AT1G68530 : 5.00E-138
Blast annotation: 3-ketoacyl-CoA synthase 6

2.Location

Scaffold: PH01001011
Strand: -

RegionStartEnd
gene103724105323
mRNA103724105323
exon103724105323
CDS103924105258

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000896Fatty_acid_elongation
fatty acid biosynthetic process,
transferase activity, transferring acyl groups other than amino-acyl groups,
membrane,
metabolic process,
catalytic activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
lipid binding,
lipid transport,
nitrogen compound metabolic process,
lipid biosynthetic process,
transferase activity, transferring acyl groups,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08392.11FAE1_CUT1_RppA71362
PF02797.14Chal_sti_synt_C382435

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fatty acid elongation3-ketoacyl-CoA synthase [EC:2.3.1.199]ko00062K15397

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006633fatty acid biosynthetic process
GO:0008152metabolic process
GO:0016020membrane
GO:0016746transferase activity, transferring acyl groups
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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