PH01001016G0490's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT5G45560 : 1.70E-55
Blast annotation: Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01001016
Strand: -
| Region | Start | End |
| gene | 322129 | 325459 |
| mRNA | 322129 | 325459 |
| exon | 322129 | 322514 |
| exon | 322803 | 322843 |
| exon | 322930 | 323050 |
| exon | 323147 | 323220 |
| exon | 323605 | 323636 |
| exon | 324025 | 324131 |
| exon | 324405 | 324470 |
| exon | 324808 | 324861 |
| exon | 324945 | 325459 |
| CDS | 322488 | 322514 |
| CDS | 322803 | 322843 |
| CDS | 322930 | 323050 |
| CDS | 323147 | 323220 |
| CDS | 323605 | 323636 |
| CDS | 324025 | 324131 |
| CDS | 324405 | 324470 |
| CDS | 324808 | 324861 |
| CDS | 324945 | 325175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00169.28 | PH | 8 | 115 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005543 | phospholipid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.