PH01001018G0090's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT4G13040 : 9.80E-35
Blast annotation: Integrase-type DNA-binding superfamily protein
2.Location
Scaffold: PH01001018
Strand: -
| Region | Start | End |
| gene | 55234 | 59986 |
| mRNA | 55234 | 59986 |
| exon | 55234 | 55535 |
| exon | 55832 | 55878 |
| exon | 56888 | 57068 |
| exon | 57139 | 57187 |
| exon | 57562 | 57708 |
| exon | 58757 | 58863 |
| exon | 59440 | 59986 |
| CDS | 55399 | 55535 |
| CDS | 55832 | 55878 |
| CDS | 56888 | 57068 |
| CDS | 57139 | 57187 |
| CDS | 57562 | 57708 |
| CDS | 58757 | 58863 |
| CDS | 59440 | 59566 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-ERF |
| Transcription_Regulator(from PlantTFDB) | ERF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 98 | 142 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.