PH01001018G0350's details annotation
1.Annotation
ICBR annotation: RecF/RecN/SMC N terminal domain containing protein, expressed
Blast result AT2G31970 : 5.20E-54
Blast annotation: DNA repair-recombination protein (RAD50)
2.Location
Scaffold: PH01001018
Strand: +
| Region | Start | End |
| gene | 294207 | 296824 |
| mRNA | 294207 | 296824 |
| exon | 294207 | 294425 |
| exon | 295451 | 295679 |
| exon | 295758 | 295936 |
| exon | 296048 | 296218 |
| exon | 296600 | 296824 |
| CDS | 294273 | 294425 |
| CDS | 295451 | 295679 |
| CDS | 295758 | 295936 |
| CDS | 296048 | 296218 |
| CDS | 296600 | 296758 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006281 | DNA repair |
| GO:0030870 | Mre11 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.