PH01001018G0530's details annotation
1.Annotation
ICBR annotation: HSF-type DNA-binding domain containing protein, expressed
Blast result AT4G13980 : 2.00E-89
Blast annotation: winged-helix DNA-binding transcription factor family protein
2.Location
Scaffold: PH01001018
Strand: -
| Region | Start | End |
| gene | 398822 | 404463 |
| mRNA | 398822 | 404463 |
| exon | 398822 | 400777 |
| exon | 401516 | 401557 |
| exon | 404049 | 404463 |
| CDS | 399587 | 400777 |
| CDS | 401516 | 401557 |
| CDS | 404049 | 404315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB) metabolic process, sterol_24-C-methyltransferase_activity Steroid_biosynthesis protein kinase C-activating G-protein coupled receptor signaling pathway, steroid biosynthetic process, diacylglycerol kinase activity, NAD+ kinase activity, |
| coexpression network | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB) NAD+ kinase activity, diacylglycerol kinase activity, protein kinase C-activating G-protein coupled receptor signaling pathway, |
| coexpression network | CFinderM001630 | GTnc GlycosylTransferases HSF Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001632 | translation, Ribosome structural constituent of ribosome, intracellular, Ribosome HSF Transcription_Regulator(from PlantTFDB) RLK-Pelle_WAK_LRK10L-1 (from iTAK) large ribosomal subunit, |
| coexpression network | CFinderM001753 | Endocytosis HSF Transcription_Regulator(from PlantTFDB) single-stranded DNA binding, |
| coexpression network | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB) fatty-acyl-CoA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HSF |
| Transcription_Regulator(from PlantTFDB) | HSF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00447.16 | HSF_DNA-bind | 30 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.