Annotation of co-expression genes

PH01001019G0410's details annotation

1.Annotation

ICBR annotation: choline monooxygenase, chloroplast precursor, putative, expressed

Blast result AT4G29890 : 7.00E-100
Blast annotation: choline monooxygenase, putative (CMO-like)

2.Location

Scaffold: PH01001019
Strand: +

RegionStartEnd
gene251148255401
mRNA251148255401
exon251148251681
exon252211252256
exon252505252646
exon252841253200
exon253717253989
exon254351254401
exon254866255401
CDS251429251681
CDS252211252256
CDS252505252646
CDS252841253200
CDS253717253989
CDS254351254401
CDS254866255003

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00355.25Rieske81162
PF00848.18Ring_hydroxyl_A369417

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0006725cellular aromatic compound metabolic process
GO:0016491oxidoreductase activity
GO:0016708oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor
GO:0019439aromatic compound catabolic process
GO:00515372 iron, 2 sulfur cluster binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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