PH01001020G0120's details annotation
1.Annotation
ICBR annotation: polygalacturonase, putative, expressed
Blast result AT3G16850 : 4.00E-146
Blast annotation: Pectin lyase-like superfamily protein
2.Location
Scaffold: PH01001020
Strand: +
| Region | Start | End |
| gene | 86669 | 90646 |
| mRNA | 86669 | 90646 |
| exon | 86669 | 87036 |
| exon | 87401 | 87703 |
| exon | 88689 | 88809 |
| exon | 88909 | 89083 |
| exon | 89205 | 89275 |
| exon | 89662 | 90646 |
| CDS | 87025 | 87036 |
| CDS | 87401 | 87703 |
| CDS | 88689 | 88809 |
| CDS | 88909 | 89083 |
| CDS | 89205 | 89275 |
| CDS | 89662 | 90332 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000614 | protein processing, ATP biosynthetic process, ATP_catabolic_process plant-type cell wall organization, GH28 Glycoside_Hydrolases extracellular region, integral to membrane, Phosphatidylinositol_signaling_system Oxidative_phosphorylation |
| coexpression network | CFinderM000815 | GH28 Glycoside_Hydrolases RLK-Pelle_RLCK-V (from iTAK) ATP biosynthetic process, ATP_catabolic_process Oxidative_phosphorylation metal ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH28 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00295.16 | Glyco_hydro_28 | 130 | 414 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.