PH01001020G0310's details annotation
1.Annotation
ICBR annotation: drought induced 19 protein, putative, expressed
Blast result AT1G56280 : 1.40E-20
Blast annotation: drought-induced 19
2.Location
Scaffold: PH01001020
Strand: +
| Region | Start | End |
| gene | 214800 | 221807 |
| mRNA | 214800 | 221807 |
| exon | 214800 | 215274 |
| exon | 215383 | 215543 |
| exon | 215671 | 215720 |
| exon | 219398 | 219463 |
| exon | 219907 | 219984 |
| exon | 220388 | 220639 |
| exon | 220928 | 221807 |
| CDS | 215226 | 215274 |
| CDS | 215383 | 215543 |
| CDS | 215671 | 215720 |
| CDS | 219398 | 219463 |
| CDS | 219907 | 219984 |
| CDS | 220388 | 220639 |
| CDS | 220928 | 221030 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05605.11 | zf-Di19 | 40 | 70 |
| PF14571.5 | Di19_C | 151 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.