Annotation of co-expression genes

PH01001024G0200's details annotation

1.Annotation

ICBR annotation: beta-galactosidase, putative, expressed

Blast result AT3G54440 : 0.00E+00
Blast annotation: glycoside hydrolase family 2 protein

2.Location

Scaffold: PH01001024
Strand: +

RegionStartEnd
gene146866157988
mRNA146866157988
exon146866148141
exon148264148380
exon148728148874
exon149543149621
exon150473150656
exon151873151938
exon152094152330
exon152429152635
exon152744153047
exon153120153291
exon153389153497
exon153885154020
exon154199154254
exon154332154631
exon154705154827
exon156746157450
exon157557157988
CDS148009148141
CDS148264148380
CDS148728148874
CDS149543149621
CDS150473150656
CDS151873151938
CDS152094152330
CDS152429152635
CDS152744153047
CDS153120153291
CDS153389153497
CDS153885154020
CDS154199154254
CDS154332154631
CDS154705154827
CDS156746157450
CDS157557157727

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02837.17Glyco_hydro_2_N72219
PF00703.20Glyco_hydro_2222349
PF02836.16Glyco_hydro_2_C353641
PF16353.4DUF4981648741
PF02929.16Bgal_small_N7721062

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Galactose metabolismbeta-galactosidase [EC:3.2.1.23]ko00052K01190
Sphingolipid metabolismbeta-galactosidase [EC:3.2.1.23]ko00600K01190
Other glycan degradationbeta-galactosidase [EC:3.2.1.23]ko00511K01190

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565beta-galactosidase activity
GO:0005975carbohydrate metabolic process
GO:0009341beta-galactosidase complex
GO:0030246carbohydrate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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