Annotation of co-expression genes

PH01001027G0090's details annotation

1.Annotation

ICBR annotation: gibberellin receptor GID1L2, putative, expressed

Blast result AT1G47480 : 1.60E-49
Blast annotation: alpha/beta-Hydrolases superfamily protein

2.Location

Scaffold: PH01001027
Strand: +

RegionStartEnd
gene4768350731
mRNA4768350731
exon4768349569
exon4970050731
CDS4898849569
CDS4970050113

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000438GTnc GlycosylTransferases
Base_excision_repair
methylation,
metabolic process,
amino_acid_transmembrane_transport
base-excision repair,
fatty-acyl-CoA binding,
DNA-3-methyladenine glycosylase activity,
amino acid transmembrane transporter activity,
catalytic activity,
coexpression networkCFinderM000619TKL-Pl-4 (from iTAK)
Ubiquitin_mediated_proteolysis
coexpression networkCFinderM001327

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07859.12Abhydrolase_3135194
PF07859.12Abhydrolase_3221307

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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