PH01001028G0460's details annotation
1.Annotation
ICBR annotation: GTP-binding protein, putative, expressed
Blast result AT1G72660 : 2.00E-123
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001028
Strand: -
| Region | Start | End |
| gene | 320576 | 326729 |
| mRNA | 320576 | 326729 |
| exon | 320576 | 322767 |
| exon | 322927 | 323097 |
| exon | 323184 | 323297 |
| exon | 323544 | 323693 |
| exon | 323767 | 323886 |
| exon | 325045 | 325119 |
| exon | 325365 | 325375 |
| exon | 325924 | 326729 |
| CDS | 322672 | 322767 |
| CDS | 322927 | 323097 |
| CDS | 323184 | 323297 |
| CDS | 323544 | 323693 |
| CDS | 323767 | 323886 |
| CDS | 325045 | 325119 |
| CDS | 325365 | 325375 |
| CDS | 325924 | 326107 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000119 | |
| coexpression network | CFinderM000124 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM000197 | Amino_sugar_and_nucleotide_sugar_metabolism cellular aldehyde metabolic process, |
| coexpression network | CFinderM000321 | Biosynthesis_of_siderophore_group_nonribosomal_peptides isochorismate synthase activity, Fatty_acid_biosynthesis Ubiquinone_and_other_terpenoid-quinone_biosynthesis thiolester_hydrolase_activity |
| coexpression network | CFinderM000706 | C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000751 | Cutin,_suberine_and_wax_biosynthesis Peroxisome fatty-acyl-CoA_reductase_(alcohol-forming)_activity MYB Transcription_Regulator(from PlantTFDB) lipid biosynthetic process, metabolic process, fatty acid biosynthetic process, |
| coexpression network | CFinderM000857 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATP biosynthetic process, ATP_catabolic_process nitrogen compound metabolic process, Oxidative_phosphorylation |
| coexpression network | CFinderM000858 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) nitrogen compound metabolic process, |
| coexpression network | CFinderM000896 | Fatty_acid_elongation fatty acid biosynthetic process, transferase activity, transferring acyl groups other than amino-acyl groups, membrane, metabolic process, catalytic activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, lipid binding, lipid transport, nitrogen compound metabolic process, lipid biosynthetic process, transferase activity, transferring acyl groups, |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001523 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16897.4 | MMR_HSR1_Xtn | 98 | 196 |
| PF02824.20 | TGS | 197 | 273 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.