Annotation of co-expression genes

PH01001028G0480's details annotation

1.Annotation

ICBR annotation: GTP-binding protein, putative, expressed

Blast result AT1G72660 : 1.50E-79
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01001028
Strand: -

RegionStartEnd
gene331903335852
mRNA331903335852
exon331903331958
exon332024332080
exon332186332366
exon332792332868
exon333126333193
exon333842335852
CDS331950331958
CDS332024332080
CDS332186332366
CDS332792332868
CDS333126333193
CDS333842333911

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01926.22MMR_HSR164148

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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