Annotation of co-expression genes

PH01001028G0620's details annotation

1.Annotation

ICBR annotation: NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed

Blast result AT1G17650 : 4.00E-115
Blast annotation: glyoxylate reductase 2

2.Location

Scaffold: PH01001028
Strand: -

RegionStartEnd
gene431176434358
mRNA431176434358
exon431176431673
exon431770431874
exon431977432049
exon432139432209
exon432298432420
exon432675432759
exon432853432908
exon433005433080
exon433586433651
exon433892433988
exon434115434358
CDS431506431673
CDS431770431874
CDS431977432049
CDS432139432209
CDS432298432420
CDS432675432759
CDS432853432908
CDS433005433080
CDS433586433651
CDS433892433988
CDS434115434217

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03446.14NAD_binding_246161
PF14833.5NAD_binding_11211330

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004616phosphogluconate dehydrogenase (decarboxylating) activity
GO:0006098pentose-phosphate shunt
GO:0006573valine metabolic process
GO:00084423-hydroxyisobutyrate dehydrogenase activity
GO:0016491oxidoreductase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662coenzyme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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