PH01001030G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G48720 : 1.30E-22
Blast annotation: x-ray induced transcript 1
2.Location
Scaffold: PH01001030
Strand: +
| Region | Start | End |
| gene | 159442 | 165897 |
| mRNA | 159442 | 165897 |
| exon | 159442 | 161919 |
| exon | 163415 | 163471 |
| exon | 164046 | 164098 |
| exon | 164187 | 164309 |
| exon | 164392 | 164528 |
| exon | 164616 | 164694 |
| exon | 165317 | 165397 |
| exon | 165506 | 165897 |
| CDS | 161750 | 161919 |
| CDS | 163415 | 163471 |
| CDS | 164046 | 164098 |
| CDS | 164187 | 164309 |
| CDS | 164392 | 164528 |
| CDS | 164616 | 164694 |
| CDS | 165317 | 165397 |
| CDS | 165506 | 165759 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000108 | CMGC_CDK-CRK7-CDK9 (from iTAK) Peroxisome myosin complex, microtubule associated complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.