PH01001031G0260's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT5G63860 : 2.60E-73
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01001031
Strand: +
| Region | Start | End |
| gene | 155787 | 157106 |
| mRNA | 155787 | 157106 |
| exon | 155787 | 156076 |
| exon | 156234 | 156420 |
| exon | 156520 | 156666 |
| exon | 156977 | 157058 |
| exon | 157089 | 157106 |
| CDS | 155977 | 156076 |
| CDS | 156234 | 156420 |
| CDS | 156520 | 156666 |
| CDS | 156977 | 157058 |
| CDS | 157089 | 157100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 38 | 83 |
| PF00415.17 | RCC1 | 90 | 137 |
| PF00415.17 | RCC1 | 141 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.