PH01001033G0030's details annotation
1.Annotation
ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed
Blast result AT3G11210 : 1.90E-93
Blast annotation: SGNH hydrolase-type esterase superfamily protein
2.Location
Scaffold: PH01001033
Strand: -
| Region | Start | End |
| gene | 23503 | 27078 |
| mRNA | 23503 | 27078 |
| exon | 23503 | 23928 |
| exon | 24023 | 24172 |
| exon | 24307 | 24383 |
| exon | 24459 | 24599 |
| exon | 25300 | 25377 |
| exon | 26530 | 27078 |
| CDS | 23715 | 23928 |
| CDS | 24023 | 24172 |
| CDS | 24307 | 24383 |
| CDS | 24459 | 24599 |
| CDS | 25300 | 25377 |
| CDS | 26530 | 26652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000689 | hydrolase activity, acting on ester bonds, lipid metabolic process, hydrolase activity, RLK-Pelle_Extensin (from iTAK) lipase activity, lipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13472.5 | Lipase_GDSL_2 | 15 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0016787 | hydrolase activity |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.