PH01001035G0130's details annotation
1.Annotation
ICBR annotation: thaumatin, putative, expressed
Blast result AT4G36010 : 3.70E-43
Blast annotation: Pathogenesis-related thaumatin superfamily protein
2.Location
Scaffold: PH01001035
Strand: +
| Region | Start | End |
| gene | 105886 | 107343 |
| mRNA | 105886 | 107343 |
| exon | 105886 | 106041 |
| exon | 106328 | 106677 |
| exon | 106790 | 107343 |
| CDS | 105948 | 106041 |
| CDS | 106328 | 106677 |
| CDS | 106790 | 107038 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00314.16 | Thaumatin | 45 | 151 |
| PF00314.16 | Thaumatin | 155 | 228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.