Annotation of co-expression genes

PH01001039G0380's details annotation

1.Annotation

ICBR annotation: methyladenine glycosylase, putative, expressed

Blast result AT5G57970 : 1.20E-92
Blast annotation: DNA glycosylase superfamily protein

2.Location

Scaffold: PH01001039
Strand: -

RegionStartEnd
gene264214268331
mRNA264214268331
exon264214265439
exon265538265679
exon265757265840
exon265942265999
exon266935268331
CDS265044265439
CDS265538265679
CDS265757265840
CDS265942265999
CDS266935267514

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03352.12Adenine_glyco192365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Base excision repairDNA-3-methyladenine glycosylase I [EC:3.2.2.20]ko03410K01246

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006281DNA repair
GO:0006284base-excision repair
GO:0008725DNA-3-methyladenine glycosylase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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