Annotation of co-expression genes

PH01001042G0390's details annotation

1.Annotation

ICBR annotation: zinc finger family protein, putative, expressed

Blast result AT5G37340 : 1.00E-123
Blast annotation: ZPR1 zinc-finger domain protein

2.Location

Scaffold: PH01001042
Strand: -

RegionStartEnd
gene286473292856
mRNA286473292856
exon286473286682
exon286914287019
exon288324288415
exon288913289021
exon289757289846
exon289952290022
exon290511290643
exon290920291202
exon291543291670
exon291754291813
exon291917291973
exon292065292109
exon292382292856
CDS286582286682
CDS286914287019
CDS288324288415
CDS288913289021
CDS289757289846
CDS289952290022
CDS290511290643
CDS290920291202
CDS291543291670
CDS291754291813
CDS291917291973
CDS292065292109
CDS292382292705

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000706C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03367.12zf-ZPR1108203
PF03367.12zf-ZPR1342485

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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