PH01001046G0030's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT1G05230 : 1.90E-89
Blast annotation: homeodomain GLABROUS 2
2.Location
Scaffold: PH01001046
Strand: +
| Region | Start | End |
| gene | 9547 | 15098 |
| mRNA | 9547 | 15098 |
| exon | 9547 | 10931 |
| exon | 12144 | 12560 |
| exon | 12719 | 12961 |
| exon | 13124 | 13501 |
| exon | 13769 | 14047 |
| exon | 14300 | 15098 |
| CDS | 10857 | 10931 |
| CDS | 12144 | 12560 |
| CDS | 12719 | 12961 |
| CDS | 13124 | 13501 |
| CDS | 13769 | 14047 |
| CDS | 14300 | 14686 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000056 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_biosynthesis nucleus, transition metal ion binding, acyl-[acyl-carrier-protein] desaturase activity, fatty acid metabolic process, lipid biosynthetic process, sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity, fatty acid biosynthetic process, YABBY Transcription_Regulator(from PlantTFDB) C2C2-YABBY Transcription_Regulator(from iTAK) lipase activity, Rho GDP-dissociation inhibitor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 109 | 164 |
| PF01852.18 | START | 244 | 371 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.