PH01001048G0050's details annotation
1.Annotation
ICBR annotation: ZOS7-06 - C2H2 zinc finger protein, expressed
Blast result AT1G03840 : 1.20E-70
Blast annotation: C2H2 and C2HC zinc fingers superfamily protein
2.Location
Scaffold: PH01001048
Strand: -
| Region | Start | End |
| gene | 72722 | 77126 |
| mRNA | 72722 | 77126 |
| exon | 72722 | 73906 |
| exon | 74124 | 74425 |
| exon | 74530 | 74932 |
| exon | 74994 | 77126 |
| CDS | 72870 | 73906 |
| CDS | 74124 | 74425 |
| CDS | 74530 | 74932 |
| CDS | 74994 | 75132 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001264 | cis-Golgi network, Rab GDP-dissociation inhibitor activity, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
| Transcription_Regulator(from PlantTFDB) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00096.25 | zf-C2H2 | 50 | 72 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.