PH01001048G0160's details annotation
1.Annotation
ICBR annotation: ruvB-like 2, putative, expressed
Blast result AT5G67630 : 3.00E-94
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001048
Strand: -
| Region | Start | End |
| gene | 143706 | 148497 |
| mRNA | 143706 | 148497 |
| exon | 143706 | 145407 |
| exon | 145598 | 145650 |
| exon | 147560 | 147715 |
| exon | 148188 | 148497 |
| CDS | 144762 | 145407 |
| CDS | 145598 | 145650 |
| CDS | 147560 | 147715 |
| CDS | 148188 | 148406 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06068.12 | TIP49 | 144 | 300 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003678 | DNA helicase activity |
| GO:0005524 | ATP binding |
| GO:0031011 | Ino80 complex |
| GO:0043141 | ATP-dependent 5'-3' DNA helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.