PH01001049G0510's details annotation
1.Annotation
ICBR annotation: glutathione S-transferase, putative, expressed
Blast result AT3G62760 : 9.20E-56
Blast annotation: Glutathione S-transferase family protein
2.Location
Scaffold: PH01001049
Strand: +
| Region | Start | End |
| gene | 354047 | 356407 |
| mRNA | 354047 | 356407 |
| exon | 354047 | 354675 |
| exon | 354793 | 354841 |
| exon | 355487 | 356407 |
| CDS | 354523 | 354675 |
| CDS | 354793 | 354841 |
| CDS | 355487 | 355944 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000374 | AUX/IAA Transcription_Regulator(from iTAK) GT8 GlycosylTransferases Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
| coexpression network | CFinderM000629 | RLK-Pelle_LRR-XIV (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) transcription factor TFIID complex, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Basal_transcription_factors |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02798.19 | GST_N | 3 | 77 |
| PF00043.24 | GST_C | 117 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glutathione metabolism | glutathione S-transferase [EC:2.5.1.18] | ko00480 | K00799 |
| Metabolism of xenobiotics by cytochrome P450 | glutathione S-transferase [EC:2.5.1.18] | ko00980 | K00799 |
| Drug metabolism - cytochrome P450 | glutathione S-transferase [EC:2.5.1.18] | ko00982 | K00799 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.