PH01001050G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G22720 : 4.30E-26
Blast annotation: SPT2 chromatin protein
2.Location
Scaffold: PH01001050
Strand: -
| Region | Start | End |
| gene | 128007 | 138127 |
| mRNA | 128007 | 138127 |
| exon | 128007 | 129726 |
| exon | 130373 | 130462 |
| exon | 131169 | 131282 |
| exon | 132027 | 132157 |
| exon | 132332 | 133333 |
| exon | 133426 | 133500 |
| exon | 133573 | 133687 |
| exon | 134223 | 138127 |
| CDS | 129621 | 129726 |
| CDS | 130373 | 130462 |
| CDS | 131169 | 131282 |
| CDS | 132027 | 132157 |
| CDS | 132332 | 133333 |
| CDS | 133426 | 133500 |
| CDS | 133573 | 133687 |
| CDS | 134223 | 134452 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000821 | CMGC_CDKL-Os (from iTAK) barrier_septum_assembly |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.