Annotation of co-expression genes

PH01001050G0570's details annotation

1.Annotation

ICBR annotation: ATP-dependent RNA helicase DHX36, putative, expressed

Blast result AT2G01130 : 0.00E+00
Blast annotation: DEA(D/H)-box RNA helicase family protein

2.Location

Scaffold: PH01001050
Strand: -

RegionStartEnd
gene397989413403
mRNA397989413403
exon397989399282
exon400051400161
exon400247400399
exon400506400565
exon400803401111
exon401294401442
exon401539401608
exon402346402540
exon404379404894
exon405388405513
exon405591405635
exon406292406422
exon406524406683
exon407028407216
exon407522407617
exon408584408829
exon408912408999
exon409085409239
exon412255413403
CDS398800399282
CDS400051400161
CDS400247400399
CDS400506400565
CDS400803401111
CDS401294401442
CDS401539401608
CDS402346402540
CDS404379404894
CDS405388405513
CDS405591405635
CDS406292406422
CDS406524406683
CDS407028407216
CDS407522407617
CDS408584408829
CDS408912408999
CDS409085409239
CDS412255412512

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00270.28DEAD274425
PF00271.30Helicase_C614712
PF04408.22HA2739828
PF07717.15OB_NTP_bind895977
PF00035.25dsrm10821144

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA degradationATP-dependent RNA helicase DHX36 [EC:3.6.4.13]ko03018K14442

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003725double-stranded RNA binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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