PH01001051G0590's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT4G18750 : 7.00E-92
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001051
Strand: +
| Region | Start | End |
| gene | 396693 | 399719 |
| mRNA | 396693 | 399719 |
| exon | 396693 | 397190 |
| exon | 397244 | 399719 |
| CDS | 396861 | 397190 |
| CDS | 397244 | 399172 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 162 | 191 |
| PF01535.19 | PPR | 234 | 260 |
| PF01535.19 | PPR | 262 | 289 |
| PF01535.19 | PPR | 364 | 394 |
| PF01535.19 | PPR | 465 | 493 |
| PF13041.5 | PPR_2 | 565 | 604 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.