PH01001052G0340's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed
Blast result AT1G28440 : 0.00E+00
Blast annotation: HAESA-like 1
2.Location
Scaffold: PH01001052
Strand: +
| Region | Start | End |
| gene | 216439 | 221272 |
| mRNA | 216439 | 221272 |
| exon | 216439 | 220014 |
| exon | 220065 | 220684 |
| exon | 220778 | 221272 |
| CDS | 218138 | 220014 |
| CDS | 220065 | 220684 |
| CDS | 220778 | 221127 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 23 | 60 |
| PF13855.5 | LRR_8 | 67 | 126 |
| PF00069.24 | Pkinase | 650 | 865 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.