Annotation of co-expression genes

PH01001054G0500's details annotation

1.Annotation

ICBR annotation: TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed

Blast result AT1G70520 : 1.70E-74
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 2

2.Location

Scaffold: PH01001054
Strand: -

RegionStartEnd
gene311137317600
mRNA311137317600
exon311137311222
exon311607311687
exon312217312265
exon312338312417
exon313264313423
exon313462313693
exon314023314236
exon314401314528
exon315763315894
exon316261316323
exon316637317080
exon317220317600
CDS311208311222
CDS311607311687
CDS312217312265
CDS312338312417
CDS313264313423
CDS313462313693
CDS314023314236
CDS314401314528
CDS315763315894
CDS316261316323
CDS316637317080
CDS317220317424

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01657.16Stress-antifung119198
PF07714.16Pkinase_Tyr311510

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.