PH01001056G0180's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT2G45460 : 4.00E-128
Blast annotation: SMAD/FHA domain-containing protein
2.Location
Scaffold: PH01001056
Strand: -
| Region | Start | End |
| gene | 108530 | 115004 |
| mRNA | 108530 | 115004 |
| exon | 108530 | 109999 |
| exon | 110106 | 110227 |
| exon | 110465 | 110524 |
| exon | 110646 | 110744 |
| exon | 110822 | 110872 |
| exon | 110970 | 111171 |
| exon | 111561 | 111763 |
| exon | 112120 | 112206 |
| exon | 112286 | 112351 |
| exon | 112843 | 112929 |
| exon | 113009 | 113150 |
| exon | 113750 | 113925 |
| exon | 114451 | 115004 |
| CDS | 108871 | 109999 |
| CDS | 110106 | 110227 |
| CDS | 110465 | 110524 |
| CDS | 110646 | 110744 |
| CDS | 110822 | 110872 |
| CDS | 110970 | 111171 |
| CDS | 111561 | 111763 |
| CDS | 112120 | 112206 |
| CDS | 112286 | 112351 |
| CDS | 112843 | 112929 |
| CDS | 113009 | 113150 |
| CDS | 113750 | 113925 |
| CDS | 114451 | 114675 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001333 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.