PH01001057G0390's details annotation
1.Annotation
ICBR annotation: inner membrane protein alx, putative, expressed
Blast result AT5G12130 : 2.20E-95
Blast annotation: integral membrane TerC family protein
2.Location
Scaffold: PH01001057
Strand: -
| Region | Start | End |
| gene | 273745 | 277749 |
| mRNA | 273745 | 277749 |
| exon | 273745 | 273890 |
| exon | 273998 | 274055 |
| exon | 274322 | 274396 |
| exon | 275250 | 275306 |
| exon | 275602 | 275651 |
| exon | 275844 | 275925 |
| exon | 276476 | 276532 |
| exon | 276784 | 276871 |
| exon | 277457 | 277533 |
| exon | 277635 | 277749 |
| CDS | 273784 | 273890 |
| CDS | 273998 | 274055 |
| CDS | 274322 | 274396 |
| CDS | 275250 | 275306 |
| CDS | 275602 | 275651 |
| CDS | 275844 | 275925 |
| CDS | 276476 | 276532 |
| CDS | 276784 | 276871 |
| CDS | 277457 | 277533 |
| CDS | 277635 | 277745 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03741.15 | TerC | 137 | 340 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.