PH01001057G0610's details annotation
1.Annotation
ICBR annotation: DEAD/DEAH box helicase domain containing protein, expressed
Blast result AT5G61140 : 5.20E-64
Blast annotation: U5 small nuclear ribonucleoprotein helicase
2.Location
Scaffold: PH01001057
Strand: +
| Region | Start | End |
| gene | 410246 | 414791 |
| mRNA | 410246 | 414791 |
| exon | 410246 | 411095 |
| exon | 411417 | 411629 |
| exon | 412035 | 412102 |
| exon | 412188 | 412353 |
| exon | 412464 | 412526 |
| exon | 412870 | 412965 |
| exon | 414159 | 414791 |
| CDS | 410907 | 411095 |
| CDS | 411417 | 411629 |
| CDS | 412035 | 412102 |
| CDS | 412188 | 412353 |
| CDS | 412464 | 412526 |
| CDS | 412870 | 412965 |
| CDS | 414159 | 414392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02889.15 | Sec63 | 184 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.