PH01001058G0150's details annotation
1.Annotation
ICBR annotation: sulfate transporter, putative, expressed
Blast result AT1G23090 : 6.00E-138
Blast annotation: sulfate transporter 91
2.Location
Scaffold: PH01001058
Strand: +
| Region | Start | End |
| gene | 101675 | 105885 |
| mRNA | 101675 | 105885 |
| exon | 101675 | 102234 |
| exon | 102729 | 102842 |
| exon | 102939 | 103055 |
| exon | 103891 | 104017 |
| exon | 104123 | 104409 |
| exon | 104503 | 104693 |
| exon | 104782 | 104861 |
| exon | 105165 | 105241 |
| exon | 105337 | 105885 |
| CDS | 102073 | 102234 |
| CDS | 102729 | 102842 |
| CDS | 102939 | 103055 |
| CDS | 103891 | 104017 |
| CDS | 104123 | 104409 |
| CDS | 104503 | 104693 |
| CDS | 104782 | 104861 |
| CDS | 105165 | 105241 |
| CDS | 105337 | 105486 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00916.19 | Sulfate_transp | 57 | 252 |
| PF01740.20 | STAS | 304 | 421 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008272 | sulfate transport |
| GO:0015116 | sulfate transmembrane transporter activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.