PH01001058G0460's details annotation
1.Annotation
ICBR annotation: plant-specific domain TIGR01627 family protein, expressed
Blast result AT5G67210 : 2.60E-58
Blast annotation: Protein of unknown function (DUF579)
2.Location
Scaffold: PH01001058
Strand: -
| Region | Start | End |
| gene | 310367 | 312023 |
| mRNA | 310367 | 312023 |
| exon | 310367 | 312023 |
| CDS | 310606 | 311487 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001225 | Valine,_leucine_and_isoleucine_degradation TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) beta-Alanine_metabolism Propanoate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04669.12 | Polysacc_synt_4 | 88 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.