PH01001066G0520's details annotation
1.Annotation
ICBR annotation: glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed
Blast result AT5G44070 : 5.00E-134
Blast annotation: phytochelatin synthase 1 (PCS1)
2.Location
Scaffold: PH01001066
Strand: +
| Region | Start | End |
| gene | 380392 | 390127 |
| mRNA | 380392 | 390127 |
| exon | 380392 | 381416 |
| exon | 383510 | 383591 |
| exon | 383649 | 383876 |
| exon | 384148 | 384639 |
| exon | 386401 | 386628 |
| exon | 386706 | 387236 |
| exon | 387718 | 390127 |
| CDS | 380692 | 381416 |
| CDS | 383510 | 383591 |
| CDS | 383649 | 383876 |
| CDS | 384148 | 384639 |
| CDS | 386401 | 386628 |
| CDS | 386706 | 387236 |
| CDS | 387718 | 387804 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000919 | mRNA_cleavage_factor_complex mRNA_polyadenylation phytochelatin biosynthetic process, response to metal ion, nitrogen compound metabolic process, Styrene_degradation Regulation_of_autophagy Aminobenzoate_degradation Tryptophan_metabolism Cyanoamino_acid_metabolism glutathione gamma-glutamylcysteinyltransferase activity, mRNA_binding Nitrogen_metabolism C3H Transcription_Regulator(from PlantTFDB) GNAT Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05023.13 | Phytochelatin | 5 | 156 |
| PF05023.13 | Phytochelatin | 174 | 246 |
| PF09328.9 | Phytochelatin_C | 269 | 509 |
| PF09328.9 | Phytochelatin_C | 510 | 770 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010038 | response to metal ion |
| GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity |
| GO:0046872 | metal ion binding |
| GO:0046938 | phytochelatin biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.