Annotation of co-expression genes

PH01001069G0410's details annotation

1.Annotation

ICBR annotation: ras-related protein, putative, expressed

Blast result AT3G46830 : 1.90E-86
Blast annotation: RAB GTPase homolog A2C

2.Location

Scaffold: PH01001069
Strand: -

RegionStartEnd
gene376985380031
mRNA376985380031
exon376985377921
exon378764380031
CDS377433377921
CDS378764378928

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001098intracellular,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras14173

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0006184GTP catabolic process
GO:0006886intracellular protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.